YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUC8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.96
Transmembrane Helix	34	54	0.85
Non-Cytoplasmic	55	68	0.75
Transmembrane Helix	69	89	0.92
Cytoplasmic	90	102	0.88
Transmembrane Helix	103	122	0.96
Non-Cytoplasmic	123	139	0.84
Transmembrane Helix	140	158	0.88
Cytoplasmic	159	179	0.84
Transmembrane Helix	180	200	0.92
Non-Cytoplasmic	201	224	0.82
Transmembrane Helix	225	245	0.92
Cytoplasmic	246	277	0.93
Transmembrane Helix	278	298	0.91
Non-Cytoplasmic	299	325	0.92
Transmembrane Helix	326	347	0.89
Cytoplasmic	348	359	0.75
Transmembrane Helix	360	379	0.94
Non-Cytoplasmic	380	400	0.84
Transmembrane Helix	401	425	0.87
Cytoplasmic	426	436	0.69
Transmembrane Helix	437	459	0.83
Non-Cytoplasmic	460	469	0.75
Transmembrane Helix	470	491	0.91
Cytoplasmic	492	492	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLQAKNDV VAVDRQSSSS LADLDGPSPL RKMISVASIA AGIQFGWALQ LSLLTPYVQL  60
   61 LGVPHKWSSF IWLCGPVSGL LVQPSVGYFS DRCTSRFGRR RPFIATGALL VAVAVVLIGY 120
  121 AADFGHSMGD KIDKPVKMRA VVIFALGFWI LDVANNTLQG PCRAFLGDLA AGDAKKTRTA 180
  181 NAFFSFFMAV GNVLGYAAGS YTNLYKIFPF TMTKACDIYC ANLKSCFFLS ITLLLVVTII 240
  241 ALWYVEDKQW SPKADSDNEK TPFFGEIFGA FKVMKRPMWM LLIVTALNWI AWFPFLLYDT 300
  301 DWMGREVYGG DSKGDDKMKK LYNQGIHVGA LGLMLNSIVL GIVSLGIEGI SKKIGGAKRL 360
  361 WGAVNIILAV CLAMTVLVTK KAEEHRRIAG PMALPTDGIR AGALTLFALL GIPLAITFSI 420
  421 PFALASIISS SSGAGQGLSL GVLNMAIVIP QMIVSFGVGP IDALFGGGNL PRFVVGAIAA 480
  481 AISSVVAFTV LP