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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|157822039, gi...
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDKASLKLG LDKAVLQSMS GRENATNGVQ QLSKKEIEDL LRKGAYGALM DEEDEGSKFC  60
   61 EEDIDQILLR RTHTITIESE GKGSTFAKAS FVASGNRTDI SLDDPNFWQK WAKKAELDID 120
  121 ALNGRNNLVI DTPRVRKQTR LYSAVKEDEL MEFSDLESDS EEKPCIKPRR PQDKTQGYAR 180
  181 SECFRVEKNL LVYGWGRWTD ILSHGRYKRQ LTEHDVETIC RAILVYCLNH YRGDENIKSF 240
  241 IWDLITPTAD GQTRALLNHS GLSAPVPRGR KGKKVKAQSM QPVVQDADWL ASCNPDALFQ 300
  301 EDSYKKHLKH HCNKVLLRVR MLYYLRQEVI GDQAEKILEG ADSSEADVWI PEPFHAEVPA 360
  361 DWWDKEADKS LLIGVFKHGY EKYNSMRADP ALCFLERVGM PDAKAIAAEQ RGTDMLADGG 420
  421 DGGEFDREDE DPEYKPTRAP FKDEIDEFAN SPPEDKEDSM EAQSTGKHSE SNAELGQLYW 480
  481 PNTSSLTTRL RRLITAYQRS YKRQQMRQEA LMKTDRRRRR PREEVRALEA EREAIISEKR 540
  541 QKWTRREEAD FYRVVSTFGV IFDPVKQQFD WNQFRAFARL DKKSDESLEK YFSCFVAMCR 600
  601 RVCRMPAKPE DEPPDLASLI EPITEERASR TLYRIELLRK IREQVLHHPQ LSDRLKLCQP 660
  661 SLDLPEWWEC GRHDRDLLVG AAKHGVSRTD YHILNDPELS FLDAHKSFAQ NRGASTVPSL 720
  721 NTLAMGFGQA PPVIASAHAH EEKVMEQAEG KAEECEHSPA KERSDGKEEE EEAGGAKDSR 780
  781 QECEAEASSV KGELKGVEGS GDPGSKSVSE KGSEEDEEEK LEDDDKSEES SQPEGAVSRG 840
  841 KTFDEESNAS MSTARDETRD GFYMEDGDPS VAQLLHERTF AFSFWPKDRV MINRLDNICE 900
  901 AVLKGKWPIN RRQMFDFQGL VPGYPPSTVD SPLQKRSFAE LSMVSQASVS ASEDITTSPQ 960
  961 LSKDDALNLS VPRQRRRRRR KVEIEAERAA KRRNLMEMVA QLRESQVVSE NGQEKVVDLS1020
 1021 KASREATSST SNFSSLTSKF ILPNVSTPVS DAFKTQMELL QAGLSRTPTR HVLNGSLVDG1080
 1081 EPPMKRRRGR RKNVEGLDLL FMSHKRTPLS AEDAEVTKAF EEDIETPPIR NIPSPGQLDP1140
 1141 DTRIPVINLE DGTRLVGEEA PKNKDLVDWL KLHPMYTVDM PSYVPKNADV LFSPFQKPKQ1200
 1201 KRHRCRNPNK LDINTLTGEE RVPVVNKRNG KKMGGAMAPP MKDLPRWLEE NPEFAVAPDW1260
 1261 TDIVKQSGFV PESMFDRLLT GPVVRGEGAS RRGRRPKSEI ARAAAAAAAV ASTSGINPLL1320
 1321 VNSLFAGMDL TSLQNLQNLQ SLQLAGLMGF PPGLATAATA GGDAKGPAAV LPLMLPGMAG1380
 1381 LPNVFGLGGL LNNPLSAATG NTTTASSQGE PEDGTSKAEE KGNDNEDENR DSEKSTDAVS1440
 1441 AADSANGSVG AATAPAALPS NPLAFNPFLL STMAPGLFYP SMFLPPGLGG LTLPGFPALA1500
 1501 GLQNAVGASE EKAADKAEGG PCKDGETLEG SDAEENLDKT IESSILEDEV AQGEELDSLE1560
 1561 GGDEIENNGN DE

YRC Informatics Platform - Version 3.0
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