YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MKS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY  60
   61 IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE SGGGGDVSPA ARLASTENAS 120
  121 PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS 180
  181 PAIPLGLFSP AGFMSPFRSP GFTSLVASPT FADFFSHIWD QD

Type	Start	End	Confidence
Cytoplasmic	1	171	0.58
Transmembrane Helix	172	194	0.50
Non-Cytoplasmic	195	222	0.50