YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56381947, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATSHQSV VSFASLRSSP SSTISQCGFK IDSSLSFTSK KTNFCKIKAM ASSVSYDNTL  60
   61 LSPSKTIPDN SQKKSNEAAL ILIRHGESLW NEKNLFTGCV DVPLTEKGVE EAIEAGKRIS 120
  121 NIPVDVIFTS SLIRAQMTAM LAMIQHRRKK VPIILHDESE QAKTWSQVFS DETKNQSIPV 180
  181 IPAWQLNERM YGELQGLNKQ ETAERYGKEQ VHEWRRSYDI PPPKGESLEM CAERAVAYFQ 240
  241 DNIEPKLAAG KNVMIAAHGN SLRSIIMYLD KLTCQEVISL ELSTGIPLLY IFKEGKFMKR 300
  301 GSPVGPTEAG VYAYTKRLAQ YRQKLEDDSE VLCA

Type	Start	End	Confidence
Signal Peptide	1	25	0.72
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	334	0.99