YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9757760, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP  60
   61 EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR GKSSLKNLLP KAGCKPKTSN 120
  121 TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS 180
  181 VAPQTPNRKG SVHIARSRSV PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT 240
  241 ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT 300
  301 CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV 360
  361 ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS VQFALVVLFA HIFYSVVKLQ 420
  421 PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS 480
  481 LHHSNTS

Type	Start	End	Confidence
Cytoplasmic	1	339	0.77
Transmembrane Helix	340	355	0.75
Non-Cytoplasmic	356	364	0.68
Transmembrane Helix	365	386	0.90
Cytoplasmic	387	393	0.89
Transmembrane Helix	394	414	0.95
Non-Cytoplasmic	415	424	0.78
Transmembrane Helix	425	447	0.93
Cytoplasmic	448	487	0.98