YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BAC2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFWPEFMAT SWGREFVAGG FGGVAGIISG YPLDTLRIRQ QQSSKSGSAF SILRRMLAIE  60
   61 GPSSLYRGMA APLASVTFQN AMVFQIYAIF SRSFDSSVPL VEPPSYRGVA LGGVATGAVQ 120
  121 SLLLTPVELI KIRLQLQQTK SGPITLAKSI LRRQGLQGLY RGLTITVLRD APAHGLYFWT 180
  181 YEYVRERLHP GCRKTGQENL RTMLVAGGLA GVASWVACYP LDVVKTRLQQ GHGAYEGIAD 240
  241 CFRKSVKQEG YTVLWRGLGT AVARAFVVNG AIFAAYEVAL RCLFNQSPSP DIVTGD

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.79
Transmembrane Helix	16	35	0.89
Cytoplasmic	36	63	0.86
Transmembrane Helix	64	88	0.75
Non-Cytoplasmic	89	107	0.82
Transmembrane Helix	108	127	0.78
Cytoplasmic	128	202	0.82
Transmembrane Helix	203	221	0.56
Non-Cytoplasmic	222	259	0.58
Transmembrane Helix	260	280	0.55
Cytoplasmic	281	296	0.47