YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MOT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.91
Transmembrane Helix	38	58	0.64
Non-Cytoplasmic	59	64	0.62
Transmembrane Helix	65	85	0.79
Cytoplasmic	86	104	0.76
Transmembrane Helix	105	130	0.80
Non-Cytoplasmic	131	138	0.56
Transmembrane Helix	139	158	0.74
Cytoplasmic	159	177	0.83
Transmembrane Helix	178	197	0.92
Non-Cytoplasmic	198	224	0.87
Transmembrane Helix	225	245	0.93
Cytoplasmic	246	308	0.66
Transmembrane Helix	309	337	0.69
Non-Cytoplasmic	338	348	0.38
Transmembrane Helix	349	371	0.86
Cytoplasmic	372	376	0.37
Transmembrane Helix	377	397	0.89
Non-Cytoplasmic	398	406	0.43
Transmembrane Helix	407	436	0.74
Cytoplasmic	437	456	0.47

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQSQRGQH ETPKRSRFTG MFHKLKTNLV FRSKLAEING AMGDLGTYIP IVLALTLAKD  60
   61 LDLGTTLIFT GIYNAITGAV YGVPMPVQPM KSIAAVAISS TAEDFGIPEI MAAGICTGGI 120
  121 LFVLGISGLM QLVFNIIPLS VVRGIQLSQG LAFAMSAVKY IRKEQNFSKS KSVGDRPWLG 180
  181 LDGLVLALVC VLFIVLVNGD GEEEEEEEEG DGSRGRGRWG SVRKVIANVP SALLIFLLGV 240
  241 VLAFIRKPSI VHDIKFGPSK MKIVRISRKA WRNGFLKGTV PQLPLSVLNS VVAVCKLSYD 300
  301 LFPEKEFSAA SVSMTVGLMN MVGCWFGAMP TCHGAGGLAG QYKFGGRSGG CVALLGVAKL 360
  361 VLGLVLGGSL VGILEKFPVG VLGALLLFAG VELAMAARDM NTKGDAFVML MCTSVSLGSN 420
  421 AAIGFVAGDL LYVVLWMRNY GRAKPSSLPP QSGEHA