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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149051074, gi...
Protein type: Transmembrane
Type Confidence: 0.54
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERPLSSLPT FAFSPLYLSR KEDTKKRRAA CLPRPPSRAA SPRLQGLDMG VLQVFAFGVL  60
   61 ALWGTRVCAQ EPEFSYGCAE GSCYPATGDL LIGRAQKLSV TSTCGLHKPE PYCIVSHLQE 120
  121 DKKCFICDSR DPYHETLNPD SHLIENVVTT FAPNRLKIWW QSENGVENVT VQLDLEAEFH 180
  181 FTHLIMTFKT FRPAAMLIER SSDFGKTWGV YRYFAYDCES SFPGISTGPM KKVDDIICDS 240
  241 RYSDIEPSTE GEVIFRALDP AFKIEDPYSP RIQNLLKITN LRIKFVKLHT LGDNLLDSRM 300
  301 EIREKYYYAV YDMVVRGNCF CYGHASECAP VDGFNEEVEG MVHGHCMCRH NTKGLNCELC 360
  361 MDFYHDLPWR PAEGRNSNAC KKCNCNEHSS SCHFDMAVFL ATGNVSGGVC DNCQHNTMGR 420
  421 NCEQCKPFYF QHPERDIRDP NLCEPCTCDP AGSENGGICD GYTDFSVGLI AGQCRCKLHV 480
  481 EGERCDVCKE GFYDLSAEDP FGCKSCACNP LGTIPGGNPC DSETGYCYCK RLVTGQRCDQ 540
  541 CLPQHWGLSN DLDGCRPCDC DLGGALNNSC SEDSGQCSCL PHMIGRQCNE VESGYYFTTL 600
  601 DHYIYEAEEA NLGPGVVVVE RRYIQDRIPS WTGPGFVRVP EGAYLEFFID NIPHSMEYEI 660
  661 LIRYEPQLPD HWEKAVITVQ RPGRIPTSSR CGNTVPDDDN QVVSLSPGSR YVVLPRPVCF 720
  721 EKGMNYTVRL ELPQYTASGS DVESPYTLID SLVLMPYCKS LDIFTVGGSG DGEVTNSAWE 780
  781 TFQRYRCLEN SRSVVKTPMT DVCRNIIFSI SALIHQAGLA CECDPQGSLS SVCDPNGGQC 840
  841 QCRPNVVGRT CNRCAPGTFG FGPNGCKPCD CHLQGSVSAF CDAVTGQCHC FQGIYARQCD 900
  901 RCLPGFWGFP SCQPCQCNGH AEDCDTVTGE CLSCQDYTTG HNCERCLAGY YGDPIIGSGD 960
  961 HCRPCPCPDG PDSGRQFARS CYQDPVTLQL ACVCDPGYIG KSVSAITWAQ 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle