YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149047474
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAGGRGCV RSLREGVLWR SSPCHCDYTA TRHFLGALQK LPLQACNTGV RKVHTAPLRT  60
   61 LFLLRPVPIL LAAGGGYAGY RQYEKYRERQ LEKLGLEIPP KLASHWEVSL YKSVPTRLLS 120
  121 RACGRLNQVE LPSWLRRPVY SLYIWTFGVN MTEAAVEDLQ HYRNLSEFFR RKLKPQARPV 180
  181 CGLHSVISPS DGKILTFGQV KNSEVEQVKG VTYSLESFLG PRACTEDLPF PPASSCDSFR 240
  241 NQLVTREGNE LYHCVIYLAP GDYHCFHSPT DWTVSHRRHF PGSLMSVNPG MARWIKELFC 300
  301 HNERVVLTGD WKHGFFSLTA VGATNVGSIR IHFDQDLHTN SPSYSKGSYN DLSFVTHANK 360
  361 EGIPMRKGEP LGEFNLGSTI VLIFEAPKDF NFRLKAGQKI LFGEALGSL

Type	Start	End	Confidence
Cytoplasmic	1	60	0.54
Transmembrane Helix	61	80	0.52
Non-Cytoplasmic	81	409	0.98