YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX17_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.95
Transmembrane Helix	28	49	0.92
Cytoplasmic	50	58	0.83
Transmembrane Helix	59	78	0.87
Non-Cytoplasmic	79	89	0.85
Transmembrane Helix	90	110	0.90
Cytoplasmic	111	123	0.88
Transmembrane Helix	124	146	0.90
Non-Cytoplasmic	147	156	0.83
Transmembrane Helix	157	179	0.90
Cytoplasmic	180	191	0.88
Transmembrane Helix	192	214	0.90
Non-Cytoplasmic	215	221	0.86
Transmembrane Helix	222	243	0.91
Cytoplasmic	244	261	0.87
Transmembrane Helix	262	287	0.84
Non-Cytoplasmic	288	340	0.65
Transmembrane Helix	341	365	0.82
Cytoplasmic	366	403	0.36
Transmembrane Helix	404	427	0.89
Non-Cytoplasmic	428	820	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTNGTTCPG PMKATSNGVF QGENPLEHAL PLLILQICIV LLLTRLLAFL LRPLRQPRVI  60
   61 AEIVGGILLG PSALGKSTKF INTVFPPKSL TVLDTLANLG LIFFLFLVGL ELDPKSLKRT 120
  121 GKRALSIALA GITLPFVLGI GTSFALRSSI ADGASKAPFL VFMGVALSIT AFPVLARILA 180
  181 EIKLLTTDIG KIALSAAAVN DVAAWILLAL AVALSGEGSS PLTSLWVFLS GCGFVLFCIF 240
  241 VVQPGIKLIA KRCPEGEPVN ELYVCCTLGI VLAASFVTDF IGIHALFGAF VIGVIFPKEG 300
  301 NFANALVEKV EDLVSGLFLP LYFVSSGLKT NVATIQGAQS WGLLVLVIFN ACFGKIIGTV 360
  361 LVSLYCKVPL DQSLALGFLM NTKGLVELIV LNIGKDRGVL NDQIFAIMVL MAIFTTFMTT 420
  421 PLVLAVYKPG KSLTKADYKN RTVEETNRSN KPLCLMFCFQ SIMNIPTIVN LIEASRGINR 480
  481 KENLSVYAMH LMELSERSSA ILMAHKVRRN GLPFWNKDKS ENNSSSSDMV VVAFEAFRRL 540
  541 SRVSVRPMTA ISPMATIHED ICQSAERKKT AMVILPFHKH VRLDRTWETT RNDYRWINKK 600
  601 VMEESPCSVA ILVDRGLGGT TRVASSDFSL TITVLFFGGN DDREALAFAV RMAEHPGISL 660
  661 TVVRFIPSDE FKPENVRIEI TEDQLCSGAT RLIDIEAITE LKAKIKEKES SRSNSDSESH 720
  721 IIYEEKIVKC YEEVIEVIKE YSKSNLFLVG KSPEGSVASG INVRSDTPEL GPIGNLLTES 780
  781 ESVSTVASVL VVQQYIASRP VGISKNVTTE ESLVEDSESP