YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|195540097, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.93
Transmembrane Helix	47	68	0.91
Non-Cytoplasmic	69	87	0.84
Transmembrane Helix	88	106	0.91
Cytoplasmic	107	126	0.83
Transmembrane Helix	127	145	0.87
Non-Cytoplasmic	146	152	0.69
Transmembrane Helix	153	172	0.93
Cytoplasmic	173	183	0.78
Transmembrane Helix	184	205	0.82
Non-Cytoplasmic	206	220	0.77
Transmembrane Helix	221	243	0.91
Cytoplasmic	244	258	0.80
Transmembrane Helix	259	278	0.94
Non-Cytoplasmic	279	290	0.80
Transmembrane Helix	291	310	0.96
Cytoplasmic	311	318	0.83
Transmembrane Helix	319	339	0.92
Non-Cytoplasmic	340	345	0.76
Transmembrane Helix	346	364	0.84
Cytoplasmic	365	387	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGYEYVSPE QLAGFDKYKY SALDTNPLSL YVMHPFWNTI VKVFPTWLAP NLITFSGFML  60
   61 LVFNFLLLTY FDPDFYASAP GHKHVPDWVW IVVGILNFVA YTLDGVDGKQ ARRTNSSTPL 120
  121 GELFDHGLDS WACVYFVVTV YSIFGRGPTG VSVFVLYLLL WVVLFSFILS HWEKYNTGVL 180
  181 FLPWGYDISQ VTISFVYIVT AVVGVEAWYE PFLFNFLYRD LFTAMIIGCA LCVTLPMSLL 240
  241 NFYRSYKSNS LKHNSIYEAM VPFFSPCLLF TLSTVWILRS PSDILEMHPR IFYFMVGTAF 300
  301 ANITCQLIVC QMSSTRCPTL NWLLLPLFLV VATVIVGTTT SRLESVLLYT LTAAFTLAHI 360
  361 HYGVQVVKQL SRHFQIYPFS LRKPNSD