YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCAM2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARHDPNPFA DEEINPFANH TSVPPASNSY LKPLPPEPYD RGATVDIPLD SGNDLRAKEM  60
   61 ELQAKENELK RKEQELKRRE DAIARTGVVI EEKNWPEFFP LIHHDIPNEI PIHLQKIQYV 120
  121 AFTTLLGLVG CLLWNIVAVT VAWIKGEGPT IWLLSIIYFL AGVPGAYVLW YRPLYRATRT 180
  181 DSALKFGAFF FFYVFHIAFC GFAAVAPPVI FQGKSLTGFL PAIELLTTNA AVGIMYFIGA 240
  241 GFFCIETLLN IWVIQQVYAY FRGSGKAAEM KREATKSTLM RAL

Type	Start	End	Confidence
Cytoplasmic	1	119	0.99
Transmembrane Helix	120	143	0.90
Non-Cytoplasmic	144	150	0.81
Transmembrane Helix	151	171	0.96
Cytoplasmic	172	188	0.87
Transmembrane Helix	189	211	0.90
Non-Cytoplasmic	212	231	0.84
Transmembrane Helix	232	254	0.85
Cytoplasmic	255	283	0.97