YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149049891, gi...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTMERLHPA FPSYLLLVLF GIWRTVPQIH ASSTGLLPLS ATSFLEELMK RYGENDSLTL  60
   61 PQLKTLLNSV GVGRDNVSLP KEAHRNLSTC FSSGDLFAAH NFSERSRIGK SEFQEFCPTI 120
  121 LQQLDSRACT PENQENKENE QTEEGKPSAI EVWGFGFLSV SLINLASLLG VLVLPCTEKA 180
  181 FFSRVLTYFI ALSIGTLLSN ALFQLIPEAF GFNPQDNYVS KSAVVFGGFY LFFFTEKILK 240
  241 MLLKQKNEHH HGHNHFTSET LPSKKDQEEG VTEKLQNGDL DHMIPQHCNN DLDGKAPSTD 300
  301 EKVIVGSMSV QDLQASQSAC YWLKGVRYSD IGTLAWMITL SDGLHNFIDG LAIGASFTVS 360
  361 VFQGISTSVA ILCEEFPHEL GDFVILLNAG MSIQQALFFN FLSACCCYVG LAFGILAGSH 420
  421 FSANWIFALA GGMFLYIALA DMFPEMNEVC QEDEKKDSFL VPFVIQNLGL LTGFSIMLVL 480
  481 TMYSGQIQIG

Type	Start	End	Confidence
Cytoplasmic	1	9	0.51
Transmembrane Helix	10	27	0.52
Non-Cytoplasmic	28	152	0.95
Transmembrane Helix	153	174	0.93
Cytoplasmic	175	184	0.80
Transmembrane Helix	185	206	0.92
Non-Cytoplasmic	207	217	0.89
Transmembrane Helix	218	235	0.91
Cytoplasmic	236	395	0.79
Transmembrane Helix	396	417	0.90
Non-Cytoplasmic	418	422	0.47
Transmembrane Helix	423	443	0.87
Cytoplasmic	444	458	0.57
Transmembrane Helix	459	484	0.81
Non-Cytoplasmic	485	490	0.55