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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|8920634, gi|2...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.84
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVQEGLFLV AIFFSLACTQ LVKGQHQPGE NCQNKCGNIT IEYPFGISSG CYYPGNESFS  60
   61 ITCKEDRPHV LSDIEVANFN HSGQLQVLLN RSSTCYDEQG KKTEEDSSFT LENLSLSANN 120
  121 KLTAVGCNAL SLLDTFGMQN YSTACLSLCD SPPEADGECN GRGCCRVDVS APLDSYTFET 180
  181 TSGRIKHMTS FHDFSPCTYA FLVEDDKFNF SSTEDLLNLR NVMRFPVLLD WSVGNQTCEQ 240
  241 VGSTSICGGN STCLDSTPRN GYICRCNEGF DGNPYLSAGY VNECTTSSTI HRHNCSDPKT 300
  301 CRNKVGGFYC KCQSGYRLDT TTMSCKRKEF AWTTILLVTT IGFLVILLGV ACIQQRMKHL 360
  361 KDTKLREQFF EQNGGGMLTQ RLSGAGPSNV DVKIFTEDGM KKATNGYAES RILGQGGQGT 420
  421 VYKGILPDNS IVAIKKARLG DSSQVEQFIN EVLVLSQINH RNVVKLLGCC LETEVPLLVY 480
  481 EFITNGTLFD HLHGSMIDSS LTWEHRLKIA IEVAGTLAYL HSSASIPIIH RDIKTANILL 540
  541 DVNLTAKVAD FGASRLIPMD KEELETMVQG TLGYLDPEYY NTGLLNEKSD VYSFGVVLME 600
  601 LLSGQKALCF KRPQSSKHLV SYFATATKEN RLDEIIGGEV MNEDNLKEIQ EAARIAAECT 660
  661 RLMGEERPRM KEVAAKLEAL RVEKTKHKWS DQYPEENEHL IGGHILSAQG ETSSSIGYDS 720
  721 IKNVAILDIE TGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle