YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15226643, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYDDVEIED MEWNEEIQAY TYPCPCGDLF QITKEDLRLG EEIANCPSCS LYITVIYNME  60
   61 DFQNDTKKNN EPKTRHPVAR RKYLQFTDKK TICNHDENTS AAFFGLLMVF LGKKKTKLRM 120
  121 RNSTTIMMIM MIVMMVDDWV GAADNNPVYS PCSDTQISKG DGFTIGIAIS SKEAFFLDQV 180
  181 QLSPCDTRLG LAAKMAQLAL FRPKVDEISL LSIDTSKFNP SEAGGFMVGF AGSKYAARSY 240
  241 PVKVADGSNT ITAFTLVMKL TLSPLVLEFQ KGVLQNLFWK SFGCDLCKGT GSSSSVCLNG 300
  301 TDCAVPTSKC KANGGQANCN IGIQVAFSGT DRNLESLNTW YEVNNLRQYS LTDLYANAVD 360
  361 SLSGGLL

Type	Start	End	Confidence
Cytoplasmic	1	122	0.57
Transmembrane Helix	123	141	0.55
Non-Cytoplasmic	142	367	0.98