YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BCH2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGLSTIAV TLKPLNRSSF SANHPISTAV FPPSLRFNGF RRRKILTVCF VVEERKQSSP  60
   61 MDDDNKPEST TSSSEILMTS RLLKKAEKKK SERFTYLIAA VMSSFGITSM AIMAVYYRFS 120
  121 WQMKGGEVSV LEMFGTFALS VGAAVGMEFW ARWAHRALWH DSLWNMHESH HKPREGAFEL 180
  181 NDVFAITNAV PAIGLLYYGF LNKGLVPGLC FGAGLGITMF GMAYMFVHDG LVHKRFPVGP 240
  241 IANVPYLRKV AAAHQLHHTD KFKGVPYGLF LGPKEVEEVG GKEELEKEIS RRIKLYNKGS 300
  301 STS

Type	Start	End	Confidence
Cytoplasmic	1	93	0.96
Transmembrane Helix	94	116	0.94
Non-Cytoplasmic	117	132	0.84
Transmembrane Helix	133	154	0.88
Cytoplasmic	155	179	0.92
Transmembrane Helix	180	200	0.88
Non-Cytoplasmic	201	204	0.83
Transmembrane Helix	205	227	0.90
Cytoplasmic	228	303	0.96