YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NCEH1_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSCVLLAA LLALVAYYVY IPLPSAVSDP WKLMLLDATF RGAQQVSNLI HSLGLSHHLI  60
   61 TLNFIIISFG KKSARSSPRV KVTDTDFDGV EVRVFEGPPK PDEPLRRSVV YIHGGGWALA 120
  121 SAKISYYDQL CTAMAEELNA VIVSIEYRLV PQVYFPEQIH DVIRATKYFL QPEVLDKYKV 180
  181 DPGRVGVSGD SAGGNLAAAL GQQFTYVESL KNKLKLQALI YPVLQALDFN TPSYQQSMNT 240
  241 PILPRHVMVR YWVDYFKGNY DFVEAMIVNN HTSLDVERAA ALRARLDWTS LLPSSIKKNY 300
  301 KPVLQTIGDA RIVKEIPQLL DAAASPLIAE QEVLQALPKT YILTCEHDVL RDDGIMYAKR 360
  361 LESAGVNVTL DHFEDGFHGC MIFTSWPTNF SVGIRTRDSY FKWLDQNL

Type	Start	End	Confidence
Signal Peptide	1	18	0.93
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	408	0.96