YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.58
Transmembrane Helix	21	40	0.91
Cytoplasmic	41	46	0.57
Transmembrane Helix	47	66	0.79
Non-Cytoplasmic	67	81	0.66
Transmembrane Helix	82	103	0.64
Cytoplasmic	104	114	0.84
Transmembrane Helix	115	138	0.91
Non-Cytoplasmic	139	145	0.83
Transmembrane Helix	146	168	0.90
Cytoplasmic	169	180	0.87
Transmembrane Helix	181	204	0.86
Non-Cytoplasmic	205	211	0.63
Transmembrane Helix	212	233	0.90
Cytoplasmic	234	242	0.93
Transmembrane Helix	243	262	0.85
Non-Cytoplasmic	263	295	0.58
Transmembrane Helix	296	317	0.71
Cytoplasmic	318	322	0.44
Transmembrane Helix	323	348	0.85
Non-Cytoplasmic	349	354	0.42
Transmembrane Helix	355	374	0.71
Cytoplasmic	375	386	0.32
Transmembrane Helix	387	411	0.83
Non-Cytoplasmic	412	783	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPKLLLCLP QGDELFNPLN TMFIQMACIL VFSQLFYLLL KPCGQAGPVA QILAGIVLSP  60
   61 VLLSRIPKVK EFFLQKNAAD YYSFFSFALR TSFMFLIGLE VDLHFMRRNF KKAAVITLSS 120
  121 FVVSGLLSFA SLMLFIPLFG IKEDYFTFFL VLLVTLSNTA SPVVVRSIAD WKLNTCEIGR 180
  181 LTISCALFIE LTNVVLYTII MAFISGTIIL ELFLFLLATV ALILINMVLA PWLPKRNPKE 240
  241 KYLSKAETLV FFIFLLIIGI TIESYDVNSS VSVFAIGIMF PRQGKTHRTL IQRLSYPIHE 300
  301 FVLPVYFGYI GFRFSIIALT KRFYLGIVII VIVTIAGKFI GVISACMYLK IPKKYWLFLP 360
  361 TILSVKGHVG LLLLDSNYSE KKWWTTTIHD MMVAALVITT LVSGVLASFL LKTREKDFAY 420
  421 EKTSLESHNT NEELRILSCA YGVRHARGAI SLVSALSGSR GASDPFTPLL MHLVPLPKKR 480
  481 KSELMYHEHD EDGGNANGDD EFGTNEGLEI NDSIDSFAKD SKILIQQVKL VTQMLNMHEE 540
  541 ICNATEDLRV SIVFLPFHKH QRIDGKTTND GELFRQMNRN VLRHGPCSIG IFVDRNITGF 600
  601 QQPHGFDSVQ HVATLFFGGP DDREALALCR WLANNTLIHL TVIQFVSEES KAETPVGNAM 660
  661 TRDNNEVFME VLGRNQTEQE TDRSFLEEFY NRFVTTGQVG FIEKLVSNGP HTLTILREIG 720
  721 EMYSLFVVGK STGDCPMTVR MKDWEECPEL GTVGDFLASS LDVNASVLVV QRQRHSHDSF 780
  781 IDD