YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157821691, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSISPVGCP RILNTNLRQI VVISILAAAV SLLYFSVVII RSKYGWLSKD KKFQRYLARV  60
   61 TDVEATDTNN PNVNYGIVVD CGSSGSRIFV YCWPQHNGNP HDLLDIRQMR DKNRKPVVMK 120
  121 IKPDEIQQNG QTLYLRGTGD FDLCRETLQP FMNKTNETQT SLNGVYQPPI HFQNSEFYGF 180
  181 SEFYYCTEDV LRMGGDYNAA KFTKAAKDYC ATKWSILRER FDRGLYASHA DLHRLKYQCF 240
  241 KSAWMFEVFH RGFSFPVTYK SLKTALQVYD KEVQWTLGAI LYRTRFLPLR DIRQEVFRAG 300
  301 HAHWQGVSFV YNHYLFSGCF LVVLLSILLY LLRLRRIHRR APRTGSLWME EGLPSQKGPG 360
  361 PL

Type	Start	End	Confidence
Cytoplasmic	1	19	0.77
Transmembrane Helix	20	40	0.89
Non-Cytoplasmic	41	312	0.88
Transmembrane Helix	313	332	0.97
Cytoplasmic	333	362	0.94