YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C86A7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.23
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGSTAAIIL TLIVTYIIWF VSLRRSYKGP RVWPLVGSLP ALITNAHRMH DFIADNLRMC  60
   61 GGTYQTCIFP IPFLAKKQGH VTVTCDPKNL EHILKTRFDN YPKGPSWQSV FHDLLGDGIF 120
  121 NSDGDTWRFQ RKTAALEFTT RTLRQAMARW VDRAIKNRLV PILESARSRA EPIDLQDVLL 180
  181 RLTFDNICGL TFGKDPRTLS PEFPENGFAV AFDGATEATL QRFIMPEFIW KIRKWLRLGL 240
  241 EDDMSRSISH VDNYLSEIIN TRKLELLGQQ QDESRHDDLL SRFMKKKESY SDKYLKYVAL 300
  301 NFILAGRDTS SVAMSWFFWL VSLNPRVEEK IINEICTILI KTRDTNVSKW TDEPLTFDEI 360
  361 DQLVYLKAAL SETLRLYPSV PEDSKFVVAN DVLPDGTFVP SGSNVTYSIY SVGRMKFIWG 420
  421 EDCLEFKPER WLEESRDEKC NQYKFVAFNA GPRICLGKDL AYLQMKSITA SILLRHRLTV 480
  481 APGHRVEQKM SLTLFMKFGL KMDVHKRDLT LPVEKVVNEM RKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.69
Transmembrane Helix	6	23	0.80
Cytoplasmic	24	31	0.58
Transmembrane Helix	32	47	0.23
Non-Cytoplasmic	48	523	0.67