YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12323398, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNHLQDPLT TYPKPGLTKE EQEIDEKMVS LQAESIVNAV AFPMVLKAAL ELGVIDTIAA  60
   61 ASNGTWLSPS EIAVSLPNKP TNPEAPVLLD RMLRLLVSHS ILKCCMVESR ENGQTGKIER 120
  121 VYAAEPICKY FLKDSDGSGS LSSLLLLLHS QVILKTWTNL KDVILEGKDA FSSAHDMRLF 180
  181 EYISSDDQFS KLFHRAMSES STMVMKKVLE EYRGFEDVNT LVDVGGGIGT ILGLITSKYP 240
  241 HIKGVNFDLA QVLTQAPFYP GVKHVSGDMF IEVPKGDAIF MKWILHDWGD EDCIKILKNC 300
  301 WKSLPEKGKV IIVEMITPME PKPNDFSCNT VLGMDLLMLT QCSGGKERSL SQFENLAFAS 360
  361 GFLLCEIICL SYSYSVIEFH K

Type	Start	End	Confidence
Non-Cytoplasmic	1	355	0.92
Transmembrane Helix	356	376	0.69
Cytoplasmic	377	381	0.57