YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149055831
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARESCASEA VSAAAVLFAW GANSYGQLGL GHKEDVLLPQ QLSDFCKSGC IKSVTGGGGH  60
   61 SVVVTDGGGL FVCGLNKDGQ LGLGHTEEVL RFTICKPLLG CPIRQVACGW DFTIMLTEKG 120
  121 QVLSCGSNAF GQLGVPHGPR KCVVPQAIEC LREKVVCVAA GLRHALATTD TGSTFQWGTG 180
  181 LASSGRRLCP GQNLPLFLTA KEPSRVTGLE SSTVVCAVAG SDHSASLTDT GELYVWGRNK 240
  241 HGQLASLATF LPLPQRVEAH YFQDEKVTAV WSGWTHLVAK TETGKVFTWG RADYGQLGRT 300
  301 LGSPEAQKHG EQDSSLAFQR LQNSVPSPLH CLTGAAEVSC GSEHNLAVIR DKCCSWGWNE 360
  361 HGMCGDGTES NVWTPTPVQA LPSPSRLLLV GCGAGHSLAL CQLPAHPAPC QDLTVTCPLP 420
  421 DATETTESQG AVDRERQEGE TIGDFNPKPF

Type	Start	End	Confidence
Signal Peptide	1	26	0.91
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	450	0.99