YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157821885, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHHQLGTGR YQVLHNEDDN SESSAPEQPS ASSSAAQPVE AAASAPALDA DSSPPPYSSI  60
   61 TVDGPTTSDA DVYSEFYPVP PPYSVATSLP TYDEAEKAKA AALAAAAADA PQRALTEPKL 120
  121 DQFNLIGQPN QEEECPPRDD FSDVEQLRVG NDGIFMLAFF MAFIFNWLGF CLSFCITNTI 180
  181 AGRYGAICGF GLSLIKWILI VRFSDYFTGY FNGQYWLWWI FLVLGLLLFF RGFVNYLKVR 240
  241 NMSESMAAAH RTRYFFLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	152	0.85
Transmembrane Helix	153	174	0.88
Cytoplasmic	175	179	0.67
Transmembrane Helix	180	200	0.83
Non-Cytoplasmic	201	214	0.83
Transmembrane Helix	215	235	0.93
Cytoplasmic	236	258	0.90