YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|157822391, gi...
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGARAPRLCL LLSCFCLLRV EPAAELEFKR TVQHQASALT WKAGEELQQE PAPEPSHSYQ  60
   61 MPFAVEDVTT AMEGQDAEAF DAPAMSSWER RLHRAKCAPS YLFSCFNGGE CVHPALCDCR 120
  121 RFNATGPRCQ LVYNAGPERD SICRAWGQHH VETFDGLYYY FSGKGSYMLV GHHEPEGQSF 180
  181 SIQVHNDPQC GPAHYTCPRS VSLFLSGERE ICLAKEVTHG GIRIQLPQVV AGVQLQQLAG 240
  241 YVIARYPSAF TLAWDGASAV YIKMSPEFVG WTHGLCGNNN ADPQDDLVTS YGKLTDDIGE 300
  301 FVHSWQEQVP NSPPVPVMSS LPRPPCLQQS PASMQGVYER CEVLLRSPFD ACHAYVSPLP 360
  361 FTASCTSDLC QSGGDEATWC RALTEYARAC AQAGRPLQGW RTQLSQCTVR CKEKIFIYNE 420
  421 CIACCPASCQ SHASCVDSEI ACVDGCYCPN GLIFEDGVCM SPAECPCEFH GTLHPPGSVV 480
  481 TEDCNTCTCT AGKWVCSSSV CPAECSVTGD IHFTTFDGRR YTFPATCQYI LAKSRSSGTF 540
  541 TVTLQNAPCG LNQDGACVQS VSVILHQDPR RQVTLTQAGD VLLFDQYKIT PPYSDDAFEI 600
  601 QKLSSVFLRV RTNVGVRILY DREGLRLYLQ VDQRWVEDTV GLCGTFNGNT QDDFLSPVGV 660
  661 PESTPQLFGN SWKTLSACVP LAPGSLLDPC DVHLQAASYA LQACSVLTGE LFAPCSAYLS 720
  721 PIPYFEQCRR DACRCGQPCL CATLAHYARL CRRHGLPVDF RARLPACALS CEATKEYSPC 780
  781 VALCTQTCQD LASPDVCGAN GGGNFSRDEC VEGCTCPPDT FLDTQTDLCV PRNQCSCHFQ 840
  841 GVDYPPGDSD IPSLGHCHCK DGVMSCDSRA PAATCPAGQV FVNCSELHPD PELSRERTCE 900
  901 QQLLNLSLPA RGPCLSGCAC PLGLLRHGDS CFPPEECPCT WKGKEYFPGD QVVSSCHTCV 960
  961 CQRGSFQCTL HPCASTCTAY GDRHYRTFDG LPFDFVGACK VHLVKSTSEL SFSVMVEDVN1020
 1021 CYSAGVICRK SISINVGSSL IIFDDDSGDP SPESFLDEKQ AVHIWRAGFF TLVHFPREHI1080
 1081 TLLWDQRTTV HVQAGPQWQG QLVGLCGNFD LKTVNEMRTP ENLELTNPQE FGSSWAAVEC1140
 1141 PDTPDPRDTC VLNPLREPFA RKECGILLSE VFETCHPVVD VTWFYSNCLT DTCGCSRGGD1200
 1201 CECFCASVAA YAHQCCQHGV VIDWRTPRIC PYDCDFFNKA LGKGPYQLSS VMAGSALVAM1260
 1261 RAVDGDIALV RAEDLVPGDI SSFLLTAALS KAKAHDPDVV SLEAADRPNF YLHVTANGSI1320
 1321 RLAKWRRDEA FHQHASFSLH RGTWQAGLVA LESLAKPGSF LQSSGLKLAL RTYEHTEAFR1380
 1381 GGALFRLLDA KPSGAAYPIC EWHYDACASP CFQTCRDPQA ASCQDVPRVE GCVPVCPTPK1440
 1441 VLDEVTQRCV YLEDCVEPAL RGPKETLGNE TLAPGQVLPT TSDKQQLPQE PPGASTHIPV1500
 1501 LDPLAPLTSA PNPPMAATEG PVASPGSTQP TLQTSLGLTT SNLPAGHTEA TAREEGAASL1560
 1561 LATSPPPGSS SSLPSSLQTP TSGILSSTTE TTKVTLTFAG SPNTTVTSRS PPVPRFPLMT1620
 1621 KAVTVPSHDS FPVKTTPLRP SWSLSSRPTT SPGVTSWPPT SLGSHLSTVV TNVTNKTETS1680
 1681 LSVLAQSTKS SSQPLSTAYR APASPLVTKG LEGASATEKG DAGHSQLTEL PVSPPPSSAP1740
 1741 IDLPHPAQHT TTAPGSPALS PGILGAGSPS TGAHGLGTTA LASLETTRPP HLLSGLPPDT1800
 1801 SLPLAKVGTS APVATPASKG YVPTPPPQHW ATTSATAMTV TPLTQTTLSL TAPLMSAVEE1860
 1861 QAHSPSPTAP HITAMTPSFG ASAGTAGVPP MVSVAPQKST TQRAAILSKK VSPPTLISDS1920
 1921 VQGGFTELTP TVSHTVAPLV TEAEGPQAGT VPLVPTTHSL SRVSARTASR EGPLVLLPQL1980
 1981 AEAHGTPAGL QPQEDLVRQA TTEQTGRSAP AQSIAEGSME AEGNTSAICV PIAEQDCVRH2040
 2041 ICLEGQLIRV NQTQHCPQGA VRPRCGVLGL AVRVGGDHCC PLWECACRCS IFPDLSFVTF2100
 2101 DGSHAALFKE AIYILSQSPD EIISVHALDC KSANLGHLNW PPFCLVILNV THLTHHISID2160
 2161 RFNRKVTVDS QVVWPPMSRY GFRIEDTGHM YIVQTPSHIQ IQWLHSSGLM ILEASKASKT2220
 2221 QGHGLCGICD GDTANDLTLK DGSVLGEAED PALFLDSWQV PSSLTSEGQT RFRPDSCSTA2280
 2281 DCSPCLRMVS NRTFSACHSF VSPESFCELW IRDTKYVQQP CVALTVYVAM CHKFHVCIEW2340
 2341 RGSDYCPFLC SSDSTYQACV AACEPPETCQ DGVLGPLDPE QCQVLGEGCV CSEGTILHRR2400
 2401 HSALCIPEDK CACTDSTGVP RALGETWNSS LSGCCQQQCQ APDTITPMDP DCPGPRPESC2460
 2461 PRFGEVILLQ PTEDPCCLGS VCVCNQTLCE GLAPTCRPGH RLIPHFQEDS CCPSYSCECD2520
 2521 PGLCEAEQVP TCRQDQVLIE GRLGDSCCPS YFCGCGECPD AMPECQEGEV LTVHRNSTEL2580
 2581 CCPLYQCVCE SFRCPQIQCG MGTSLVEVWS PDRCCPYKSC ECDCDTIPVP RCHLWEKSQL2640
 2641 DEEFMHSVEN VCGCAKYECV KAPVCLSREL GVMQPGQTVV ELSADGVCHT SRCTDVLDPL2700
 2701 TNFYQINITS VLCDMHCEAN QEYDHPRDLA ACCGSCRNVS CLFTFPNGTT SLFLPGASWI2760
 2761 ADCARHHCGS TPLGAVLVRS PISCPPLNET ECAKVGGSVV PSLEGCCRTC KEDGRSCKKV2820
 2821 TIRMTIRKND CRSNTPVNLV SCDGRCPSAS IYNHNINTYA RFCKCCREVG LQRRSVQLFC2880
 2881 ATNATWVPYT VQEPTDCACQ WS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle