YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKERPRPE KLSVYLYIPN IVGYMRVLLN CVAFAVCFSN KPLFSVLYFF SFCCDAVDGW  60
   61 VARRFNQVST FGAVLDMVTD RVSTACLLVI LSQIYRPSLV FLSLLALDIA SHWLQMYSTF 120
  121 LAGKSSHKDV KDSTSWLFRL YYGNRIFMCY CCVSCEVLYI ILLLIAKNQS ENLLNVVVAT 180
  181 LTQISPLSFL LALTLFGWSM KQTINVIQMK TAADVCVLYD IEKQQKP

Type	Start	End	Confidence
Cytoplasmic	1	15	0.89
Transmembrane Helix	16	38	0.84
Non-Cytoplasmic	39	43	0.74
Transmembrane Helix	44	62	0.57
Cytoplasmic	63	81	0.53
Transmembrane Helix	82	96	0.41
Non-Cytoplasmic	97	97	0.30
Transmembrane Helix	98	117	0.66
Cytoplasmic	118	145	0.47
Transmembrane Helix	146	166	0.93
Non-Cytoplasmic	167	175	0.49
Transmembrane Helix	176	199	0.86
Cytoplasmic	200	227	0.55