YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21281255, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFILSRSL LVLLLSLTAL LSSISISEAT SSFSFTSSGK NASFESEDFA LYGDAKLVDG  60
   61 GSSIQLTDSV SHGGGRVIYK KPIESMNNIK FEYFTGFSTF FSFSISPSRG GRLGFVVFPV 120
  121 NETFDHSLFQ VKFDTFDSFT QIGDSNVAVI VDGATVSERI RNFTIANLEK TEKVLLYAWI 180
  181 NYQAGGKFLE VRLSKSKSFE SVLPLMFDQI DLSQMLRDED EFMVAVNSYS GNVNLHSWSL 240
  241 EVRHSEYEHS WAPVLLEEQL RKEEQLRKEE AAKKRTSDRM WEVVTCFVMT FGSTGLVFFA 300
  301 MMHIYAAFKR NNLAMVMQEE CGIKTKEFGY KKMEKMEVVT SNADAKQERK

Type	Start	End	Confidence
Signal Peptide	1	29	0.98
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	283	0.98
Transmembrane Helix	284	307	0.81
Cytoplasmic	308	350	0.89