YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149049426, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQTSFSPHL DAMFANSSAN TSSTDSSVPQ CRDYRSTHRL HMVVYSLVLA TGLPLNALAL  60
   61 WVFLRVLRVH SVVSVYMCNL AASDLLFTLS LPLRLSYYAR HHWPFPDFLC QTSGAIFQMN 120
  121 MYGSCIFLML INVDRYAAIV HPLRLRHLRR PLVARRLCLG VWALILLFAV PAARVHSPTT 180
  181 CKYENVTLSL CFESFSDELW KGRLLPLLLL AETLGFLLPL AAVVYSSGRV FWTLARPDAT 240
  241 QSHRRQKTVR LLLANLIIFL LCFVPYNSTL AVYGLLRANL VKNSLQARDQ VRGVLMIMVL 300
  301 LAGANCVLDP LVYYFSAEGF RNTLRNLGAP FHTRPLPTNG TRGELTEPPS ESTQNTGQDA 360
  361 TSQRLLQPAN LGTRTDNGPQ DSAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.56
Transmembrane Helix	42	64	0.89
Cytoplasmic	65	71	0.51
Transmembrane Helix	72	93	0.62
Non-Cytoplasmic	94	113	0.76
Transmembrane Helix	114	133	0.82
Cytoplasmic	134	151	0.92
Transmembrane Helix	152	173	0.90
Non-Cytoplasmic	174	207	0.93
Transmembrane Helix	208	232	0.83
Cytoplasmic	233	250	0.91
Transmembrane Helix	251	273	0.89
Non-Cytoplasmic	274	293	0.91
Transmembrane Helix	294	315	0.90
Cytoplasmic	316	384	0.94