YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX53_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.77
Transmembrane Helix	13	35	0.84
Non-Cytoplasmic	36	42	0.75
Transmembrane Helix	43	66	0.81
Cytoplasmic	67	86	0.77
Transmembrane Helix	87	107	0.92
Non-Cytoplasmic	108	124	0.77
Transmembrane Helix	125	146	0.62
Cytoplasmic	147	153	0.60
Transmembrane Helix	154	178	0.81
Non-Cytoplasmic	179	187	0.63
Transmembrane Helix	188	209	0.81
Cytoplasmic	210	227	0.77
Transmembrane Helix	228	250	0.91
Non-Cytoplasmic	251	267	0.78
Transmembrane Helix	268	292	0.82
Cytoplasmic	293	308	0.72
Transmembrane Helix	309	332	0.89
Non-Cytoplasmic	333	345	0.76
Transmembrane Helix	346	365	0.73
Cytoplasmic	366	385	0.75
Transmembrane Helix	386	406	0.91
Non-Cytoplasmic	407	412	0.80
Transmembrane Helix	413	433	0.95
Cytoplasmic	434	486	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVGEEMASL TKIACPIVMT SLLIFSRSII SMWFLSHLGK VELAGGALAM GFGNITGVSV  60
   61 LKGLSVGMDP ICGQAFGAKR WTVLSHTFQK MFCLLIVVSV PIAVTWLNIE PIFLRLGQDP 120
  121 DITKVAKTYM LFFVPELLAQ AMLHPLRTFL RTQGLTSPLT ISAIVSILLH PLFNYVFVVR 180
  181 MRLGVKGVAI AMAFNTMNID VGLLVYTCFS DSLIKPWEGL ALRSLFRGWW PLLSLAAPSA 240
  241 ISVCLEYWWY EIMLFLCGLL GNPKASVAAM GILIQTTGIL YVVPFAISSA IATRVGHALG 300
  301 GGQPTRAQCT TVIGLILAVA YGLAAAVFVT ALRSVWGKMF TDEPEILGLI SAALPILGLC 360
  361 EIGNSPQTAA CGVLTGTARP KDGARVNLCA FYIVGLPVAV TTTFGFKVGF RGLWFGLLSA 420
  421 QMTCLVMMLY TLIRTDWSHQ VKRAEELTSA AADKSHSEDE TVHAEVQDDD DVSSNDLEIG 480
  481 LLQNTN