YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149042878, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.93
Transmembrane Helix	7	29	0.82
Non-Cytoplasmic	30	48	0.83
Transmembrane Helix	49	69	0.94
Cytoplasmic	70	77	0.78
Transmembrane Helix	78	101	0.87
Non-Cytoplasmic	102	107	0.68
Transmembrane Helix	108	127	0.91
Cytoplasmic	128	134	0.85
Transmembrane Helix	135	158	0.86
Non-Cytoplasmic	159	166	0.85
Transmembrane Helix	167	188	0.89
Cytoplasmic	189	226	0.96
Transmembrane Helix	227	246	0.87
Non-Cytoplasmic	247	266	0.77
Transmembrane Helix	267	288	0.86
Cytoplasmic	289	297	0.83
Transmembrane Helix	298	321	0.90
Non-Cytoplasmic	322	403	0.97
Transmembrane Helix	404	431	0.82
Cytoplasmic	432	442	0.86
Transmembrane Helix	443	463	0.89
Non-Cytoplasmic	464	470	0.65
Transmembrane Helix	471	493	0.90
Cytoplasmic	494	536	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLGPTVLPL CASVSLLGGL TFGYELAVIS GALLPLQLDF RLSCLEQELL VGSLLLGAFL  60
   61 ASLVGGFLID CYGRRRAILG SNVVLLAGSL ILGLAGSLPW LLLGRSSVGF AISLSSMACC 120
  121 IYVSELVGPR QRGVLVSLYE VGITVGILFS YGLNYVLAGS PWGWRHMFGW AAAPALLQSL 180
  181 SLFFLPAGAE GTAARQDLIP LQGGETSKLG LVKAQYTFLD LFRAQDGMWS RTVVGLGLVL 240
  241 FQQLTGQPNV LYYASTIFRS VGFHGGSSAV LASVGLGTVK VVATLIATGL VDRVGRRALL 300
  301 LSGCALMALS VSGIGLVSFA VSLDSGPSCL ATSNTSQQVD LPQTPGLLVR TSLPPVLHTS 360
  361 GDQGQPVRSV TERPIHPVIT ASLGPALNID SSVPTSPIPE HTLLCWSALV CMMVYVSAFS 420
  421 FGFGPVTWLV LSEIYPVEIR GRAFAFCSSF NWAANLFISL SFLDLIGAIG LAWTFLLYGL 480
  481 TAVLGLAFIY LLVPETKGQS LAEIEQQFQM RRFPLSFGHR QHSGIQYRRL EVSSAS