YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149038294
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPRFPEET VLITGGGGYF GFRLGCALNQ KGVRVILFDI IEPAQNLPEG ITFVRGDIRC  60
   61 LSDVEAAFQD ADIACVFHIA SYGMSGREQL NKTRIEEVNV GGTENILQAC LGRGVPSLVY 120
  121 TSTFNVIFGG QVIRNGDESL PYLPLHLHPD HYSRTKSIAE KKVLEANGLA FKQGDGVLRT 180
  181 CAIRPAGIYG AGEQRHLPRV VSYIERGLFR FVYGDPQSLV EFVHVDNLAK AHILASEALK 240
  241 ADKGHIASGQ PYFISDGRPV NNFEFFRPLV EGLGYTFPTT RLPLTLIYYF AFLIEMTHLI 300
  301 VGRLYNFQPF LTCTEVYKTG VTHYFSLEKA KSELGYAPQP FDLQEVVEWF KAHGHGRRPR 360
  361 GQDSEFILWD GILVLLLAFS VLTWIPPSTI LSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	285	0.72
Transmembrane Helix	286	302	0.57
Cytoplasmic	303	365	0.80
Transmembrane Helix	366	386	0.95
Non-Cytoplasmic	387	393	0.72