YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157820419, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVDGLQCL TMTAENPPSG DLIPAPLVTC KLCLCEQSLD KMTILQECQC IFCTPCLKQY  60
   61 MVLSIREGCG SPITCPDMVC LNHGTLQEAE IACLVPVDEF QLYQRLKFER EVHMDPLRTW 120
  121 CPVADCQTVC HITAGDPGQP VSVECPSCHL KFCSCCKDAW HEESSCRDSQ SAMPEHGALF 180
  181 GTDADSPIKQ CPVCRIYIER NEGCAQMMCK NCKHTFCWYC LQNLDNDIFL RHYDKGPCRN 240
  241 KLGHSRASVM WNRTQVVGIL VGLGVIALVT SPLLLLASPC IICCVCKSCR GKKKKHDPST 300
  301 T

Type	Start	End	Confidence
Non-Cytoplasmic	1	255	0.61
Transmembrane Helix	256	286	0.71
Cytoplasmic	287	301	0.60