YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149040244
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHLSSVAAD SDPALSAFTT GPKLPTSKMT ALLPREISSK CGTTTIVDSH SWRHQDGEET  60
   61 IPFQSEDIRP EMREDIHDPS YQDEEGPPPK LEYVWRNIIF MALLHVGALY GITLVPSCKV 120
  121 YTWLLGIFYN IVAGLGITAG AHRLWSHRTY KARLPLRLFL IMANTMAFQN DVYEWARDHR 180
  181 AHHKFSETHA DPHNSRRGFF FSHVGWLLVR KHPAVKEKGG KLDMSDLKAE KLVMFQRRYY 240
  241 KLAVTLIFIT LPTMVPWYFW GETLRHSLCV STFLRYAVLL NFTWLVNSAA HLYGHQPYDR 300
  301 SIGARENPLV SVASLGEGFH NYHHAFPYDY SVSEYRWHIN FTTFFIDCMA ALGLAYDRKR 360
  361 VSKAAVLARV KRTGDGSHKS S

Type	Start	End	Confidence
Cytoplasmic	1	93	0.99
Transmembrane Helix	94	114	0.90
Non-Cytoplasmic	115	122	0.72
Transmembrane Helix	123	145	0.90
Cytoplasmic	146	238	0.84
Transmembrane Helix	239	260	0.90
Non-Cytoplasmic	261	272	0.71
Transmembrane Helix	273	294	0.63
Cytoplasmic	295	306	0.52
Transmembrane Helix	307	321	0.22
Non-Cytoplasmic	322	336	0.58
Transmembrane Helix	337	356	0.53
Cytoplasmic	357	381	0.85