YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PGPS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSGLASLI VDVNLRRTLR PSPTFSFPAH LSRCIITSRY SSRTSLRFPI QISRHQHRLS  60
   61 YFSSSSSSEQ SRPTSSSRNS FSGHGQLDSD DNSSPPPSQS SSKVLTLPTV LTLGRVAAVP 120
  121 LLVATFYVDS WWGTTATTSI FIAAAITDWL DGYLARKMRL GSAFGAFLDP VADKLMVAAT 180
  181 LILLCTKPIQ VAELGPLPWL LTVPSIAIIG REITMSAVRE WAASQNGKLL EAVAVNNLGK 240
  241 WKTATQMTAL TILLASRDSN VGWLVASGAG LLYVSAGLSV WSLAVYMRKI WKVLMK

Type	Start	End	Confidence
Cytoplasmic	1	103	0.96
Transmembrane Helix	104	126	0.85
Non-Cytoplasmic	127	131	0.74
Transmembrane Helix	132	153	0.85
Cytoplasmic	154	170	0.84
Transmembrane Helix	171	191	0.60
Non-Cytoplasmic	192	262	0.65
Transmembrane Helix	263	285	0.90
Cytoplasmic	286	296	0.77