YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149041505, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQWNAFWSIL GLSLLAVGTC QEEYEVSISG TSVELTCPLE NEDNLKWEKN DKVLPDKNEK  60
   61 HLVLEDFSEV KDSGYYVCYT ESSRKNTYLY LKARVCENCM EVDLTAVSII IIVDICITLG 120
  121 LLMVVYYWSK KRKAKAKPVT RGTGTGGRPR GKAQGQNKER PPPVPNPDYE PIRKGQRDLY 180
  181 SGLNQRAV

Type	Start	End	Confidence
Signal Peptide	1	20	0.97
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	106	0.98
Transmembrane Helix	107	128	0.77
Cytoplasmic	129	188	0.81