YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLP1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKSPSKKN KPPSCGSLVT ILSLDGGGVR GIIAGVILAF LEKQLQELDG EEARLADYFD  60
   61 VIAGTSTGGL VTAMLTVPDE TGRPHFAAKD IVPFYLEHCP KIFPQPTGVL ALLPKLPKLL 120
  121 SGPKYSGKYL RNLLSKLLGE TRLHQTLTNI VIPTFDIKKL QPTIFSSYQL LVDPSLDVKV 180
  181 SDICIGTSAA PTFFPPHYFS NEDSQGNKTE FNLVDGAVTA NNPTLVAMTA VSKQIVKNNP 240
  241 DMGKLKPLGF DRFLVISIGT GSTKREEKYS AKKAAKWGII SWLYDDGSTP ILDITMESSR 300
  301 DMIHYHSSVV FKALQSEDKY LRIDDDTLEG DVSTMDLATK SNLENLQKIG EKMLTNRVMQ 360
  361 MNIDTGVYEP VAENITNDEQ LKRYAKILSD ERKLRRLRSD TMIKDSSNES QEIK

Type	Start	End	Confidence
Signal Peptide	1	31	0.57
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	414	0.98