YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11358494, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTSAEMDQ LTSGASNRII FILRTLRKCL VFVLSLVLSL LLILRLRPRR RVSPLSSPED  60
   61 EAVPAPSRRW RRKMAWKLEE EDTARRRSLA EGVEMAGDGE ISCSLFYGRR GNALFSRSWL 120
  121 PISGELRGIL IIIHGLNEHS GRYSQFAKQL NASNLGVYAM DWIGHGGSDG LHGYVPSLDY 180
  181 VVSDTEAFLE KIRSENPGVP CFLFGHSTGG AVVLKAASSP SIEDMLAGIV LTSPALRVKP 240
  241 AHPIVGAIAP IFSLLAPRFQ FKGANKRGIP VSRDPEALLA KYSDPLVYTG PIRVRTGYEI 300
  301 LRITAYLTRN FKSVTVPFFV LHGTEDKVTD PLASQDLYNQ APSVFKDIKL YDGFLHDLLF 360
  361 EPEREEVGRD IIDWMMNRLD DVNGSAASLW

Type	Start	End	Confidence
Cytoplasmic	1	25	0.84
Transmembrane Helix	26	46	0.88
Non-Cytoplasmic	47	390	0.89