YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157820697, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.94
Transmembrane Helix	67	84	0.66
Non-Cytoplasmic	85	93	0.52
Transmembrane Helix	94	114	0.77
Cytoplasmic	115	121	0.68
Transmembrane Helix	122	146	0.82
Non-Cytoplasmic	147	198	0.76
Transmembrane Helix	199	222	0.85
Cytoplasmic	223	229	0.74
Transmembrane Helix	230	255	0.82
Non-Cytoplasmic	256	268	0.67
Transmembrane Helix	269	291	0.79
Cytoplasmic	292	305	0.75
Transmembrane Helix	306	326	0.81
Non-Cytoplasmic	327	350	0.72
Transmembrane Helix	351	374	0.84
Cytoplasmic	375	390	0.72
Transmembrane Helix	391	414	0.68
Non-Cytoplasmic	415	426	0.42
Transmembrane Helix	427	447	0.84
Cytoplasmic	448	515	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTERSSQGF GNRYRQIPFM YDVKRSVYNE ENFQQEHRRK GPTSGNMDIN ITTFKHHVQC  60
   61 RCSWHKFLRC MLTVFPFLEW MCLYRFKDWL LGDLLAGLSV GLVQVPQGLT LSLLTRQLIP 120
  121 PLNVAYAAFC SSVIYVIFGS CHQMSIGPFF LVSALMINVL KERPFNNGHL IMGTFVKDDF 180
  181 SVPTFYLNYN RSLSMVASTT FLTGIIQLSM GMLGMGFVAT YLPEAATSAY LAAVALHIIL 240
  241 AQMTCIFGIM VSFHAGPIAF IYNIINYCIA LPKANSTSIL LFLTAVVALR VNKCIRISFN 300
  301 RYPIEFPMEL LLILGFSMLT SRITMATENS KMLINMIPYS FVFPETPEFG ILSRIVLQAL 360
  361 SLSVVSSFLL ISLGKKIANL HNYRTNSNQD LIAIGLCNLV SSFFRCCVFT GGMARTIIQD 420
  421 KSGGRQQFAS LVGAGVMLLL MVKIGSFFDN LPNAVLAGII LSNVVPYLET IYNLPTLWRQ 480
  481 DQYECVSTDA PAELGLEQSQ PELSFRQECR APQHL