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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149041088, gi...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.18
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDISNLAVDF AVVWNGNFII DNPQDLKVHL YKCAAQRESC GLCLKADHKF ECGWCSGERR  60
   61 CTLRQHCPST SSPWLDWSSH NVKCSNPQIT EILTVSGPPE GGTRVTIHGV NLGLDFSEIA 120
  121 HHVQVAGVPC TPIPGEYIIA EQIVCEMGHA LMGTTSGPVR LCIGECKPEF MTKSHQQYTF 180
  181 VNPSVLSLSP IRGPESGGTM VTITGHYLGA GSSVAVYLGN QTCEFYGRSM NEIVCVSPPS 240
  241 SNGLGPVPVS VSVDRARVDS SLQFEYIDDP RVQRIEPEWS ITSGHTPLTI TGFNLDVIQE 300
  301 PRIRVKFNGK ESVNVCTVVN TTTLTCLAPS LTSDYRPGLD TVERPDEFGF LFNNVQSLLI 360
  361 YNDTKFIYYP NPTFELLSPT GILDQKPGSP IILKGKNLCP PASGGAKLNY TVMIGETPCT 420
  421 VTVSETQLLC EPPNLTGQHK VMVHVGGMVF SPGSVSVISD SLLTLPAIIS IAAGGSLLLI 480
  481 IVIIVLIAYK RKSRENDLTL KRLQMQMDNL ESRVALECKE AFAELQTDIN ELTSDLDRSG 540
  541 IPYLDYRTYA MRVLFPGIED HPVLRELEVQ GNGQQHVEKA LKLFAQLINN KVFLLTFIRT 600
  601 LELQRSFSMR DRGNVASLIM TGLQGRLEYA TDVLKQLLSD LIDKNLENKN HPKLLLRRTE 660
  661 SVAEKMLTNW FAFLLHKFLK ECAGEPLFML YCAIKQQMEK GPIDAITGEA RYSLSEDKLI 720
  721 RQQIEYKTLI LNCVNPDNEN SPEIPVKVLN CDTITQVKEK ILDAVYKNVP YSQRPRAVDM 780
  781 DLEWRQGRIA RVVLQDEDIT TKIEGDWKRL NTLMHYQVSD RSVVALVPKQ TSSYNIPASA 840
  841 SISRTSISRY DSSFRYTGSP DSLRSRVPMI TPDLESGVKV WHLVKNHDHG DQKEGDRGSK 900
  901 MVSEIYLTRL LATKGTLQKF VDDLFETLFS TVHRGSALPL AIKYMFDFLD EQADRHSIHD 960
  961 TDVRHTWKSN CLPLRFWVNV IKNPQFVFDI HKGSITDACL SVVAQTFMDS CSTSEHRLGK1020
 1021 DSPSNKLLYA KDIPSYKNWV ERYYADIAKL PAISDQDMNA YLAEQSRLHA TEFNMLSALN1080
 1081 EIYSYVSKYS EELIGALEQD EQARRQRLAY KVEHLINAMS IES

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle