YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TET13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARDKEDQNN ENPSIVQNMS FPFNTIFLIS SAIFLVTAAF WFVAVMTLHY RTDECNRFVT  60
   61 TPGIFISFSL LAMSLTGFYA AYFKSDCLFR IHFFIFFLWM FVVVSKAIFV IFLHKETNPR 120
  121 LFPGTKIYEF RYEDYSGWVS RLVIKDDEWY RTRRCLVKDN VCNRLNHKMP ASEFYQMNLT 180
  181 PIQSGCCKPP LSCGLNYEKP NNWTVSRYYN NLEVDCKRWN NSADTLCFDC DSCKAVIIAD 240
  241 VHNTSFSITV NIIHIIFSLC IGMTGWFAWL RILRESQK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.73
Transmembrane Helix	21	45	0.86
Non-Cytoplasmic	46	60	0.64
Transmembrane Helix	61	83	0.90
Cytoplasmic	84	90	0.67
Transmembrane Helix	91	113	0.91
Non-Cytoplasmic	114	249	0.73
Transmembrane Helix	250	270	0.92
Cytoplasmic	271	278	0.63