YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25373024, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIDSLQFH SLCNLQVKIE PISSSSLTLI PSSIGRAKLQ NPSSLVIFRR RPVNLNWVQF  60
   61 ETKGSFVCKA IGDSSTPDED IQNTQSDDNV VVVTATTQSD IPHDSEYSIS RFRSMVTTLP 120
  121 PVVFLMKKCS VNSIWIGVCI TATVLVAAIR AYVVRKSRDN QRAGSVADLV RRGQLRSGDR 180
  181 RGISKSLNYE DPFNNPFVKL DKGSSTVEMC GKVYRLAPVT LTEKEQTIHQ KRRSRAYQWK 240
  241 RPTIFLKEGD SIPPDVDPDT VRWIPANHPF ATTVSDIDQD LAQNNVYQKQ GVPFRIRAEH 300
  301 EAMQKKLEAL QNEEKLNNLS IDSQNARDFQ RPYKFSAKLE GENIQKNSQE NHTGNSSSEE 360
  361 THKS

Type	Start	End	Confidence
Cytoplasmic	1	132	0.64
Transmembrane Helix	133	153	0.80
Non-Cytoplasmic	154	364	0.77