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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PERK8_ARATH
Protein type: Transmembrane
Type Confidence: 0.64
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVPPLPIL SPPSSNSSTT APPPLQTQPT TPSAPPPVTP PPSPPQSPPP VVSSSPPPPV  60
   61 VSSPPPSSSP PPSPPVITSP PPTVASSPPP PVVIASPPPS TPATTPPAPP QTVSPPPPPD 120
  121 ASPSPPAPTT TNPPPKPSPS PPGETPSPPG ETPSPPKPSP STPTPTTTTS PPPPPATSAS 180
  181 PPSSNPTDPS TLAPPPTPLP VVPREKPIAK PTGPASNNGN NTLPSSSPGK SEVGTGGIVA 240
  241 IGVIVGLVFL SLFVMGVWFT RKRKRKDPGT FVGYTMPPSA YSSPQGSDVV LFNSRSSAPP 300
  301 KMRSHSGSDY MYASSDSGMV SNQRSWFSYD ELSQVTSGFS EKNLLGEGGF GCVYKGVLSD 360
  361 GREVAVKQLK IGGSQGEREF KAEVEIISRV HHRHLVTLVG YCISEQHRLL VYDYVPNNTL 420
  421 HYHLHAPGRP VMTWETRVRV AAGAARGIAY LHEDCHPRII HRDIKSSNIL LDNSFEALVA 480
  481 DFGLAKIAQE LDLNTHVSTR VMGTFGYMAP EYATSGKLSE KADVYSYGVI LLELITGRKP 540
  541 VDTSQPLGDE SLVEWARPLL GQAIENEEFD ELVDPRLGKN FIPGEMFRMV EAAAACVRHS 600
  601 AAKRPKMSQV VRALDTLEEA TDITNGMRPG QSQVFDSRQQ SAQIRMFQRM AFGSQDYSSD 660
  661 FFDRSQSHSS WGSRDQSRFV P

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle