YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157817470, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.76
Transmembrane Helix	68	94	0.71
Non-Cytoplasmic	95	97	0.43
Transmembrane Helix	98	115	0.61
Cytoplasmic	116	141	0.87
Transmembrane Helix	142	163	0.90
Non-Cytoplasmic	164	170	0.79
Transmembrane Helix	171	189	0.93
Cytoplasmic	190	201	0.81
Transmembrane Helix	202	223	0.70
Non-Cytoplasmic	224	248	0.74
Transmembrane Helix	249	272	0.84
Cytoplasmic	273	288	0.70
Transmembrane Helix	289	312	0.70
Non-Cytoplasmic	313	320	0.44
Transmembrane Helix	321	342	0.85
Cytoplasmic	343	345	0.41
Transmembrane Helix	346	367	0.88
Non-Cytoplasmic	368	387	0.51
Transmembrane Helix	388	415	0.88
Cytoplasmic	416	601	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGAKRKKRS VLWGKMHTPH REDIKQWCKR RLPILEWAPQ YNLKENLLPD TVSGVLLAVQ  60
   61 QVTQGLSFAI LSSVHPVFGL YGSLFPAIIY AIFGMGRHVA TGTFALTSLI SANAVERLVP 120
  121 QSNRNLTTQS NSSVLGLSEF ELQRIGVAAA VSFLGGVIQI YAYVFENIKS VQLEALLLSL 180
  181 LSIVVLVLVK ELNEQFKRKI KVVLPVDLVL IIAASFACYC TNMENTYGLE VVGRIPKGIP 240
  241 PPRAPPMNIL SAVLTEAFGV ALVGYVASLA LAQGSAKKFK YSVDDNQEFL AHGLSNVIPS 300
  301 FLFCIPSAAA MGRTAGLYST GAKTQVACLI SCIFVLIVIY AIGPLLYWLP MCVLASIIVV 360
  361 GLKGMLIQFR DLKKYWNVDK IDWGIWISTY IFTICFAANV GLLFGVVCTI AIVLGRFPRA 420
  421 KTLSITDMKE MELKVKTETY DENSQQIKII SINNPLVFLN AKKFSADLMK IILKETDGSQ 480
  481 ALDDVSKCEQ NTLLSPLPNG SCTEEASQPC PSEKYSLVLN CSGLTFFDYT GVSTLVELYL 540
  541 DCKSRSVDVF LANCTASLIK AMTYYGDLDT EKPIFFDSVA TAISVIQSNK NLSKDTDHSE 600
  601 V