YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22655440, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKDGEGDKK RETMAVMSLM KDQQNPIQQF QVKFKEIETG FKSWLSKQKL PVEAAVVTAM  60
   61 GGVQGAFIGG LMGTLSPEMP QAGIDPQAMA SLKQTQALVG GPLVQARNFA AITGVNAGIA 120
  121 CVMKRIRGKE DLESAVVAAF GSGVAYSLVS AGLQGQPMNA ITTAAGFAVF QGVFFKLGER 180
  181 FSKPSVEDPY YTRGRSMLLK LGLEKYEKNF KKGLLADPTL PLLTDSALRD VSIPPGPRLL 240
  241 ILDHIQRDPE LKGKRGSRG

Type	Start	End	Confidence
Cytoplasmic	1	53	0.94
Transmembrane Helix	54	74	0.87
Non-Cytoplasmic	75	103	0.88
Transmembrane Helix	104	123	0.79
Cytoplasmic	124	133	0.74
Transmembrane Helix	134	153	0.85
Non-Cytoplasmic	154	159	0.70
Transmembrane Helix	160	177	0.85
Cytoplasmic	178	259	0.91