YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157818195, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPGRAAQSS TEAQPAAQAL ARGMRLPRFS STVVLSLLIV QTGILVFLVS RQMPSSPAGR  60
   61 GEHVHVLVLS SWRSGSSFVG QLFSQHPDVF YLMEPAWHVW DALSQASAPA LHMAVRDLIR 120
  121 SVFLCDMDVF DAYLPWRRNI SDLFQWAVSR ALCSPPVCDA FARGNISSEE VCKPLCATRP 180
  181 FGLAQEACSS YSHVVLKEVR FFNLQVLYPL LSDPALNLRI VHLVRDPRAV LRSREQTAKA 240
  241 LARDNGIVLG TNGTWVEADP RLRVVSEVCR SHVRIAEVAL HKPPPFLQDR YRLVRYEDLA 300
  301 RDPLTVIREL YAFTGLGLTP QLQTWIYNIT HGSGPGARRE AFKTTSRDAL SVSQAWRHTL 360
  361 PFAKIRRVQE LCAGALQLLG YRPVHSELEQ RDLSLDLLLP RGMDSFKWAS STDKQPES

Type	Start	End	Confidence
Cytoplasmic	1	28	0.91
Transmembrane Helix	29	49	0.89
Non-Cytoplasmic	50	418	0.96