YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7488128, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASFNMQS VFAAPSGVLT TRNIRNTNQL FFKRIAPVGV RCMAQGDPIK EDPSVPSTST  60
   61 SATPPQMPQS PPPPVSKPKV STKFGDLLAF SGPAPERING RLAMVGFVAA IAMELSKGEN 120
  121 VFAQISDGGV GWFLGTTALL TLASMVPLFK GIRAEAKSKG FMTSDAELWN GRFAMLGLVA 180
  181 LAFTEYVTGG TLETETRQRK ENLRGKQKLM ATSKLQALWN HPAGPKTIHF WAPTFKWGIS 240
  241 IANIADFQKP PENISYLQQI AVTCTGMIWC RCSTIITPKN WNLFSVNVAM AATGIYQLTR 300
  301 KIKYDYVSEA EAAVEIEG

Type	Start	End	Confidence
Cytoplasmic	1	97	0.93
Transmembrane Helix	98	116	0.86
Non-Cytoplasmic	117	129	0.81
Transmembrane Helix	130	149	0.94
Cytoplasmic	150	167	0.89
Transmembrane Helix	168	189	0.81
Non-Cytoplasmic	190	318	0.83