YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20197720, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTPIHAVST WVRRQPPKVK AFLAVVSGMA ALVLLKLIVH DHDNLFVAAE AVHSIGISVL  60
   61 IYKLMKEKTC AGLSLKSQEL TAIFLAVRLY CSFVMEYDIH TILDLATLGT TLWVIYMIRF 120
  121 NLKTTYMEEK DNFALYYVLA PCVVLAVWIH PSTSHNILNR ISWGFCVYLE AVSVLPQLRV 180
  181 MQNTKIVEPF TAHYVFALGV ARFFSCAHWV LQMMDTHGRL LVVLGYGLWP SMVIISEIVQ 240
  241 TFILADFCYY YVKSVFGGQL VLRLPSGVV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	39	0.98
Non-Cytoplasmic	40	45	0.86
Transmembrane Helix	46	65	0.68
Cytoplasmic	66	74	0.62
Transmembrane Helix	75	92	0.60
Non-Cytoplasmic	93	99	0.68
Transmembrane Helix	100	120	0.86
Cytoplasmic	121	132	0.85
Transmembrane Helix	133	152	0.94
Non-Cytoplasmic	153	160	0.78
Transmembrane Helix	161	180	0.62
Cytoplasmic	181	189	0.60
Transmembrane Helix	190	211	0.92
Non-Cytoplasmic	212	221	0.56
Transmembrane Helix	222	250	0.67
Cytoplasmic	251	269	0.59