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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RLP30_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPSQSNSFS GSVITLYFFL LGSLVLRTLA SSRLHYCRHD QRDALLEFKH EFPVSESKPS  60
   61 PSLSSWNKTS DCCFWEGVTC DDESGEVVSL DLSYVLLNNS LKPTSGLFKL QQLQNLTLSD 120
  121 CHLYGEVTSS LGNLSRLTHL DLSSNQLTGE VLASVSKLNQ LRDLLLSENS FSGNIPTSFT 180
  181 NLTKLSSLDI SSNQFTLENF SFILPNLTSL SSLNVASNHF KSTLPSDMSG LHNLKYFDVR 240
  241 ENSFVGTFPT SLFTIPSLQI VYLEGNQFMG PIKFGNISSS SRLWDLNLAD NKFDGPIPEY 300
  301 ISEIHSLIVL DLSHNNLVGP IPTSISKLVN LQHLSLSNNT LEGEVPGCLW GLMTVTLSHN 360
  361 SFNSFGKSSS GALDGESMQE LDLGSNSLGG PFPHWICKQR FLKYLDLSNN LFNGSIPPCL 420
  421 KNSTYWLKGL VLRNNSFSGF LPDVFVNASM LLSLDVSYNR LEGKLPKSLI NCTGMELLNV 480
  481 GSNIIKDTFP SWLVSLPSLR VLILRSNAFY GSLYYDHISF GFQHLRLIDI SQNGFSGTLS 540
  541 PLYFSNWREM VTSVLEENGS NIGTEDWYMG EKGPEFSHSN SMTMIYKGVE TDFLRIPYFF 600
  601 RAIDFSGNRF FGNIPESVGL LKELRLLNLS GNSFTSNIPQ SLANLTNLET LDLSRNQLSG 660
  661 HIPRDLGSLS FLSTMNFSHN LLEGPVPLGT QFQSQHCSTF MDNLRLYGLE KICGKAHAPS 720
  721 STPLESEEFS EPEEQVINWI AAAIAYGPGV FCGLVIGHIF FTAHKHEWFM EKFHRNKRRV 780
  781 VTTSAR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle