YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149046516
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLKGVSCPW SLPLCLCFLD VMSPFSGLSL HVLELVMTHY TRVVNVFFKQ VGRQAGQGTS  60
   61 RLDQIDGGQQ LAEKAPSPQQ DIGLKVLPGP LKVSIVGSGN WASAVSKIIG NNVKTTKKFA 120
  121 SPVKMWVFEE IVNGRKLTDI INTDHENVKY LPGYRLPENV IATPSLSQAV QDADLLVFAF 180
  181 PHQFIRKICD ELAEVVPRKA RGLTLIKGID EGPESLKLIS DIIREKVNID VSVLMGANLA 240
  241 NEVAAEQFCE TTIGSKVLQN GLLFKELFQT PNFRVTVVED PDTVELCGAL KNIVAMGSGF 300
  301 CDSFCCGNST KAAVIRLGLM EMISFVRTFS KGQVSIATFL ESCGVADLIS TCYGGRNRKV 360
  361 AEAFARTGKS LEELEKEMLK GQKLQGPHTS AQVYRILKQK GLLDKFPLFT VVYQICYEGR 420
  421 AVTELIPCLQ NHPEHRRREL GTSPALPHPS QGHTDTRT

Type	Start	End	Confidence
Signal Peptide	1	29	0.82
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	458	0.99