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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149041917, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.85
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPRGFLVA WTLSLWPGFT DTFNMDTRNP RVIAGPSAAF FGYTVQQHDI SGKKWLVVGA  60
   61 PLETNGHQKT GDVYKCPVTQ GNCTKLNLGR VTLSNACSPL WSHECGSSYY TTGMCSRVNS 120
  121 NFRFSKTVAP ALQRCQTYMD IVIVLDGSNS IYPWVEVQHF LIEILTKFYI GPGQIQVGIV 180
  181 QYGEDAVHEF HLNDYKSVKD VVEAASHIEQ RGGTETRTAF GIEFARSEAF QKGGRKGAKK 240
  241 VMIVITDGES HDSPDLEKVI RQSEKDNVTR YAVAVLGYYN RRGINPETFL NEIKYIASDP 300
  301 DDKHFFNVTD EAALKDIVDA LGDRIFSLEG TNKNETSFGL EMSQTGFSSH VVEDGVLLGA 360
  361 VGAYDWNGAV LKETSAGKVI PLRESYLKEF PEELKNHAAY LGYTVTSVVS SKQGRVYVAG 420
  421 APRFNHTGKV ILFSIHTNRS LTIHQALRGE QIGSYFGSEI TSVDINNDRV TDVLLVGAPM 480
  481 YFSEGRERGK VYVYNLRQNR FVFNGTLKDS HSYQNARFGS CIASVQDLNQ DSYNDVVVGA 540
  541 PLEDSHRGAI YIFHGFQTNI LKKPVQRISA SELAPGLQHF GCSIHGQLDL NEDGLVDLAV 600
  601 GALGNAVVLW ARPVVQINAS LHFEPSKINI FHKDCKRNGR DATCLAAFLC FGPIFLAPHF 660
  661 HTATVGKPAS LGGIRYNATM DERRYMPRAH LDEGADQFTN RAVLLSSGQE HCQRINFHVL 720
  721 DTADYVKPVA FSVEYSLEDP DHGPMLDNGW PTTLRVSVPF WNGCNEDEHC VPDLVLDARS 780
  781 DLPTAMEYCQ QVLRRPAQDC SSYTLSFDTT VFIIESTRRR VAVEATLENR GENAYSAVLN 840
  841 ISQSENLQFA SLIQKDDSDN SIECVNEERR LHKKVCNVSY PFFRAKAKVA FRLDFEFSKS 900
  901 VFLHHLQIHL GAGSDSHEQD STADDNTALL RFHLKYEADV LFTRSSSLSH FEVKANSSLE 960
  961 SYDGIGPPFN CVFKVQNLGF FPIHGVMMKI TVPIATRGGN RLLMLKDFFT DQVNTSCNIW1020
 1021 GNSTEYRSTP TEEDLSHAPQ RNHSNSDVVS IICNVRLAPN QETSFYLVGN LWLMSLKALK1080
 1081 YRSMKITVNA ALQRQFHSPF IFREEDPSRQ VTFEISKQED WQVPIWIIVG SSLGGLLLLA1140
 1141 LLVLALWKLG FFKSAKRKRE PSLGPVPKEL E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle