YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149044369, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSTFLLAE ACGFTGVVAV LFCGITQAHY TYNNLSVESR SRSKQLFEVL HFLAENFIFS  60
   61 YMGLALFTFQ KHVFSPIFII GAFVAIFLGR AAHIYPLSFF LNLGRRHKIG WNFQHMMMFS 120
  121 GLRGAMAFAL AIRDTASYSR QMMFTTTLLI VFFTVWVIGG GTTPMLSWLN IRVGVEELSE 180
  181 EDQNEHRWQY FRVGVDPDQD PPPNNDSFQV LQGDGLDSVG GSRTKQESAW IFRLWYSFDH 240
  241 NYLKPILTHS GPPLTTTLPA WCGLMARCLT SPQVYDNQEP LREDDSDFIL TEGDLTLTYG 300
  301 DSTVTANGSS SSYTASTSLE CGRRTKSSSE EVLERDLGMG DQKVSSRGTP LVFPLQENA

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.62
Transmembrane Helix	7	30	0.86
Cytoplasmic	31	48	0.62
Transmembrane Helix	49	69	0.83
Non-Cytoplasmic	70	73	0.59
Transmembrane Helix	74	94	0.89
Cytoplasmic	95	110	0.60
Transmembrane Helix	111	132	0.87
Non-Cytoplasmic	133	142	0.59
Transmembrane Helix	143	166	0.84
Cytoplasmic	167	359	0.71